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For a full list of publications from the IRM beamline, please click HERE

Selected publications by acquisition technique

 Transmission

Fixed on CaF2 slides

Liquid cell

Extended wavenumber range (<1000 cm-1)

 "Hybrid" macro-ATR

 Reflection

 Grazing Incidence Angle

Selected publications by research field

Please see the list on the ANSTO website

IRM recommended reading

The following are a list of published, peer-reviewed journal articles and book chapters that you may find useful, related to IR microscopy.

 Australian IRM Beamline

Use of our microfabricated holder to study living cancer cells

  • M.J. Tobin, L. Puskar, R.L Barber, E.C. Harvey, P. Heraud, B.R. Wood, K.R. Bambery, C.T. Dillon, K.L Munro. Vibrational Spectroscopy, 53, 34 (2010)

Regarding the implementation of top-up mode 

  • E.D. van Garderen, K.R. Bambery, M. Clift, G.S. LeBlanc, D.E. Martin, L. Puskar, A. Starritt, M.J. Tobin, D. Wang, D. Zhu. Journal of Physics: Conference Series 425, 042015 (2013) 

Applications of our in-house developed “hybrid” macro-ATR accessory

  • J. Vongsviviut, D. Pérez-Guaita, B.R. Wood, P. Heraud, K. Khambatta, D. Hartnell, M.J. Hackett, M.J. Tobin. Analyst, 144, 3226 (2019)

 Reference articles and book chapters

Vibrational spectroscopy reference series. Extensive set of articles.

  • P.R. Griffiths. Handbook of vibrational spectroscopy. John M Chalmers; Wiley InterScience (1942)

Reference article with an extensive list of IR peak positions (from biological tissues)

  • Z. Movasaghi, S. Pehman, I. ur Rehman. Applied Spectroscopy Reviews. 43, 134 (2008)

Good reference article on IR microscopy of living cells

  • H.-Y. N. Holman, H.A. Bechtel, Z. Hao, M.C. Martin. Analytical Chemistry, 21, 8757 (2010)

Detailed IR Microscopy book chapter focusing on biological samples, including spectral/imaging processing techniques

  • K. Malek, B.R. Wood, K.R. Bambery. FTIR Imaging of Tissues: Techniques and Methods of Analysis; Chapter 15. in book M. Baranska (ed), Optical spectroscopy and computational methods in biology and medicine. Springer Science (2014)

 Transmission vs transflection

  • M. Miljkovic, B. Bird, M. Diem. Analyst, 137, 3954 (2012)

  • P. Bassan, J. Lee, A. Sachdeva, J. Pissardini, K.M. Dorling, J.S. Fletcher, A. Henderson, P. Gardner. Analyst, 138, 144 (2013)

 Spectral post-processing of collected data

  • A. Hassani, H. Martens, E.M. Qannari, A. Kohler. Chemometrics and Intelligent Laboratory Systems, 118, 246 (2012)

 Scattering correction methods

  • A. Kohler, M. Zimonja, V. Segtnan, H. Martens. Standard Normal Variate, Multiplicative Signal Correction and Extended Multiplicative Signal Correction Preprocessing in Biospectroscopy; Chapter 2.09 in book B. Walczak, R.T. Ferré, S, Brown (eds), Comprehensive Chemometrics - Chemical and biochemical data analysis, Elsevier. Vol 2, pp 139-162 (2007).

 Mie scattering applied to synchrotron-based IRM

  • A. Kohler, J. Sule-suso, G.D. Sockalingum, M. Tobin, F. Bahrami, Y. Yang, J. Pijanka, P. Dumas, M. Cotte, D.G. van Pittius, G. Parkes, H. Martens. Applied Spectroscopy, 62, 259 (2008)

  • A. Kohler, U.l Bocker, J. Warringer, A. Blomberg, S.W. Omholt, E. Startk, H. Martens. Applied Spectroscopy, 63, 296 (2009)

  • N.K. Afseth, A. Kohler. Chemometrics and Intelligent Laboratory Systems, 117, 92 (2012)

  • P. Bassan, A. Sachdeva, A. Kohler, C. Hughes, A. Henderson, J. Boyle, J.H. Shanks, M. Brown, N.W. Clarke, P. Gardner. Analyst, 137, 1370 (2012)

  • N.K. Afseth, A. Kohler. Chemometrics and Intelligent Laboratory Systems, 117, 92 (2012)

 Of biological interest

General review article looking at the IR spectroscopy of proteins

  • A. Barth. Biochimica et Biophysica Acta, 1767, 1073 (2007) 

Identifies potential issues with the different fixation methods in use for tissue sections

  • M.J. Hackett, J.A. McQuillan, F. El-Assaad, J.B. Aitken, A. Levina, D.D. Cohen, R. Siegele, E.A. Carter, G.E. Grau, N.H. Hunt, P.A. Lay. Analyst, 136, 2941 (2011) 

Monitoring the reversible B- to A-like DNA transition 

  • D.R. Whelan, K.R. Bambery, P. Heraud, M.J. Tobin, M. Diem, D. McNaughton, B.R. Wood. Nucleic Acids Research, 13, 5439 (2011)

Tissue acquisition and fixation considerations when dealing with biological tissues

  • D.M. Stitt, M.Z. Kastyak-Ibrahim, C.R. Liao, J. Morrison, B.C. Albensi, K.M Gough. Vibrational Spectroscopy, 60, 16 (2012) 

Analysis of living cells as they progress through the cell cycle

  • D.R. Whelan, K.R. Bambery, L. Puskar, D. McNaughton, B.R. Wood. Analyst, 138, 3891 (2013)

 For geological samples

Invited review article, explaining sample preparation for use with IRM

  • F.W. von Aulock, B.M. Kennedy, C.I. Schipper, J.M. Castro, D. E. Martin, C. Oze, J.M. Watkins, P.J. Wallace, L. Puskar, F. Bégué, A.R.L. Nichols, H. Tuffen. Lithos, 206-207, 52 (2014)

Example article

  • J.M. Castro, E. Cottrell, H. Tuffen, A.V. Logan, K.A. Kelley. Chemical Geology 268, 272 (2009)

 Near-field IR and other significant developments in IR microscopy

  • A. Dazzi. PhotoThermal Induced Resonance. Application to Infrared Spectromicroscopy; Chapter 16 in book S. Volz (ed.), Thermal Nanosystems and Nanomaterials, Topics in Applied Physics, 118. Springer (2009)

  • M.J. Nasse, M.J. Walsh, E.C. Mattson, R. Reininger, A. Kajdacsy-Balla, V. Macias, R. Bhargava, C. Hirschmugl. Nature Methods, 8, 413 (2011)

  • P. Hermann, A. Hoel, P. Patoka, F. Huth, E. Ruhl, G. Ulm. Optics Express, 21, 2913 (2013)

  • M.C. Martin, C. Dabat-Blondeau, M. Unger, J. Sedlmair, D.Y. Parkinson, H.A Bechtel, B. Illman, J.M. Castro, M. Keiluweit, D. Buschke, B. Ogle, M.J. Nasse, C.J. Hirschmugl. Nature Methods, 10, 861 (2013)

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