Page Comparison

Fixed on CaF₂ slides

Liquid cell

Extended wavenumber range (<1000 cm^-1)

• Levett, A., Gagen, E. J., Rintoul, L., Guagliardo, P., Diao, H., Vasconcelos, P. M., & Southam, G. (2020). Characterisation of iron oxide encrusted microbial fossils. Scientific Reports, 10(1), 1-11.

• Mazarakis, N., Vongsvivut, J., Bambery, K. R., Ververis, K., Tobin, M. J., Royce, S. G., ... & Karagiannis, T. C. (2020). Investigation of molecular mechanisms of experimental compounds in murine models of chronic allergic airways disease using synchrotron Fourier-transform infrared microspectroscopy. Scientific Reports, 10(1), 1-11.

• Takkalkar, P., Tobin, M. J., Vongsvivut, J., Mukherjee, T., Nizamuddin, S., Griffin, G., & Kao, N. (2019). Structural, thermal, rheological and optical properties of poly (lactic acid) films prepared through solvent casting and melt processing techniques. Journal of the Taiwan Institute of Chemical Engineers, 104, 293-300.

• Miszkiewicz, J. J., Rider, C., Kealy, S., Vrahnas, C., Sims, N. A., Vongsvivut, J., ... & Pagulayan, P. S. (2020). Asymmetric midshaft femur remodeling in an adult male with left sided hip joint ankylosis, Metal Period Nagsabaran, Philippines. International Journal of Paleopathology, 31, 14-22.

• Ong, L., Pax, A. P., Ong, A., Vongsvivut, J., Tobin, M. J., Kentish, S. E., & Gras, S. L. (2020). The effect of pH on the fat and protein within cream cheese and their influence on textural and rheological properties. Food Chemistry, 332, 127327.

• Chen, Y., Lee, S., Tahmasebi, A., Bai, J., Vongsvivut, J., & Yu, J. (2020). Chemical structure transformation during the later stage of plastic layers during coking using Synchrotron infrared microspectroscopy technique. Fuel, 273, 117764.

• Hajimohammadi, A., Ngo, T., & Vongsvivut, J. (2019). Interfacial chemistry of a fly ash geopolymer and aggregates. Journal of Cleaner Production, 231, 980-989.

• Vongsvivut, J., Pérez-Guaita, D., Wood, B. R., Heraud, P., Khambatta, K., Hartnell, D., ... & Tobin, M. J. (2019). Synchrotron macro ATR-FTIR microspectroscopy for high-resolution chemical mapping of single cells. Analyst, 144(10), 3226-3238.

• Vrahnas, C., Buenzli, P. R., Pearson, T. A., Pennypacker, B. L., Tobin, M. J., Bambery, K. R., ... & Sims, N. A. (2018). Differing effects of parathyroid hormone, alendronate, and odanacatib on bone formation and on the mineralization process in intracortical and endocortical bone of ovariectomized rabbits. Calcified Tissue International, 103(6), 625-637.

• Koval, S., Krahenbuhl, G., Warren, K., & O'Brien, G. (2018). Optical microscopy as a new approach for characterising dust particulates in urban environment. Journal of Environmental Management, 223, 196-202.

• Menzies, D. J., Cowie, B., Fong, C., Forsythe, J. S., Gengenbach, T. R., McLean, K. M., ... & Muir, B. W. (2010). One-step method for generating PEG-like plasma polymer gradients: chemical characterization and analysis of protein interactions. Langmuir, 26(17), 13987-13994.

Vibrational spectroscopy reference series. Extensive set of articles.

• P.R. Griffiths. Handbook of vibrational spectroscopy. John M Chalmers; Wiley InterScience (1942)

Reference article with an extensive list of IR peak positions (from biological tissues)

• Movasaghi, Z. Movasaghi, Rehman, S. Pehman, I. ur Rehman. , & ur Rehman, D. I. (2008). Fourier transform infrared (FTIR) spectroscopy of biological tissues. Applied Spectroscopy Reviews., 43(2), 134 (2008)-179.

Good reference article on IR microscopy of living cells

• Holman, H. - Y. N. Holman, Bechtel, H. A. Bechtel, Hao, Z. Hao, & Martin, M. C. Martin. (2010). Synchrotron IR spectromicroscopy: chemistry of living cells. Analytical Chemistry,  82(21), 8757 (2010)-8765

Detailed IR Microscopy book chapter focusing on biological samples, including spectral/imaging processing techniques

• K. Malek, B.R. Wood, K.R. Bambery. FTIR Imaging of Tissues: Techniques and Methods of Analysis; Chapter 15. in book M. Baranska (ed), Optical spectroscopy and computational methods in biology and medicine. Springer Science (2014)

• A. HassaniHassani, S., Martens, H. Martens, Qannari, E. M. Qannari, & Kohler, A. Kohler. (2012). Degrees of freedom estimation in principal component analysis and consensus principal component analysis. Chemometrics and Intelligent Laboratory Systems, 118, 246 (2012)-259.

• A. Kohler, M. Zimonja, V. Segtnan, H. Martens. Standard Normal Variate, Multiplicative Signal Correction and Extended Multiplicative Signal Correction Preprocessing in Biospectroscopy; Chapter 2.09 in book B. Walczak, R.T. Ferré, S, Brown (eds), Comprehensive Chemometrics - Chemical and biochemical data analysis, Elsevier. Vol 2, pp 139-162 (2007).

 Mie scattering applied to synchrotron-based IRM

• Kohler, A. Kohler, Sulé-Suso, J. Sule-suso, Sockalingum, G. D. Sockalingum, Tobin, M. Tobin, Bahrami, F. Bahrami, Y. Yang, J. Pijanka, PY. Dumas, M . Cotte, D.G. van Pittius& Parkes, G. Parkes, H. Martens. (2008). Estimating and correcting Mie scattering in synchrotron-based microscopic Fourier transform infrared spectra by extended multiplicative signal correction. Applied Spectroscopy, 62(3), 259 (2008)-266.

• Kohler, A. Kohler, Böcker, U.l Bocker, Warringer, J. Warringer, Blomberg, A. Blomberg, Omholt, S. W. Omholt, Stark, E. Startk, & Martens, H. Martens. (2009). Reducing inter-replicate variation in Fourier transform infrared spectroscopy by extended multiplicative signal correction. Applied Spectroscopy, 63(3), 296 (2009)-305.

• Afseth, N. K. Afseth, & Kohler, A. Kohler. . (2012). Extended multiplicative signal correction in vibrational spectroscopy, a tutorial. Chemometrics and Intelligent Laboratory Systems, 117, 92 (2012)-99.

• Bassan, P. Bassan, A. Sachdeva, A., Kohler, CA., Hughes, AC., Henderson, JA., Boyle, J.H. Shanks, M . Brown, N.W. Clarke& Gardner, P. Gardner. . (2012). FTIR microscopy of biological cells and tissue: data analysis using resonant Mie scattering (RMieS) EMSC algorithm. Analyst, 137, 1370 (2012)N.K. Afseth, A. Kohler. Chemometrics and Intelligent Laboratory Systems, 117, 92 (2012)6), 1370-1377.

General review article looking at the IR spectroscopy of proteins

• Barth, A. Barth. . (2007). Infrared spectroscopy of proteins. Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1767(9), 1073 (2007) -1101.

Identifies potential issues with the different fixation methods in use for tissue sections

• Hackett, M. J. Hackett, McQuillan, J. A. McQuillan, F. El-Assaad, F., Aitken, J. B. Aitken, Levina, A. Levina, Cohen, D. D. Cohen, R . Siegele, E.A. Carter, G.E. Grau, N.H. Hunt, . & Lay, P. A. Lay. (2011). Chemical alterations to murine brain tissue induced by formalin fixation: implications for biospectroscopic imaging and mapping studies of disease pathogenesis. Analyst, 136(14), 2941 (2011) -2952.

Monitoring the reversible B- to A-like DNA transition 

• Whelan, D. R. Whelan, Bambery, K. R. Bambery, Heraud, P. Heraud, Tobin, M. J. Tobin, Diem, M. Diem, McNaughton, D. McNaughton, & Wood, B. R. Wood. . (2011). Monitoring the reversible B to A-like transition of DNA in eukaryotic cells using Fourier transform infrared spectroscopy. Nucleic Acids Research, 39(13), 5439 (2011)-5448.

Tissue acquisition and fixation considerations when dealing with biological tissues

• Stitt, D. M. Stitt, Kastyak-Ibrahim, M. Z. Kastyak-Ibrahim, Liao, C. R. Liao, Morrison, J. Morrison, Albensi, B. C. Albensi, & Gough, K. M Gough. . (2012). Tissue acquisition and storage associated oxidation considerations for FTIR microspectroscopic imaging of polyunsaturated fatty acids. Vibrational Spectroscopy, 60,  16 (2012) 16-22.

Analysis of living cells as they progress through the cell cycle

• Whelan, D. R. Whelan, Bambery, K. R. Bambery, Puskar, L. Puskar, McNaughton, D. McNaughton, & Wood, B. R. Wood. (2013). Synchrotron Fourier transform infrared (FTIR) analysis of single living cells progressing through the cell cycle. Analyst, 138(14), 3891 (2013)-3899.

Invited review article, explaining sample preparation for use with IRM

• von Aulock, F. W. von Aulock, Kennedy, B. M. Kennedy, Schipper, C. I. Schipper, Castro, J. M. Castro, Martin, D. E. Martin, C. Oze, J.MC. Watkins, P .J. Wallace, L. Puskar, F. Bégué. & Nichols, A. R. L. Nichols, H. Tuffen. (2014). Advances in Fourier transform infrared spectroscopy of natural glasses: From sample preparation to data analysis. Lithos, 206-207, 52 (2014)-64.

Example article

• Castro, J. M. Castro, Cottrell, E. Cottrell, Tuffen, H. Tuffen, Logan, A. V. Logan, & Kelley, K. A. Kelley. Chemical Geology 268, 272 (2009). (2009). Spherulite crystallization induces Fe-redox redistribution in silicic melt. Chemical Geology, 268(3-4), 272-280.

• A. Dazzi. PhotoThermal Induced Resonance. Application to Infrared Spectromicroscopy; Chapter 16 in book S. Volz (ed.), Thermal Nanosystems and Nanomaterials, Topics in Applied Physics, 118. Springer (2009)

• Nasse, M. J. Nasse, Walsh, M. J. Walsh, Mattson, E. C. Mattson, Reininger, R. Reininger, A. Kajdacsy-Balla, A., Macias, V. Macias, R... Bhargava& Hirschmugl, C. Hirschmugl. . J. (2011). High-resolution Fourier-transform infrared chemical imaging with multiple synchrotron beams. Nature Methods, 8(5), 413 (2011)-416.

• Hermann, P. Hermann, Hoehl, A. Hoel, Patoka, P. Patoka, Huth, F. Huth, Rühl, E. Ruhl, & Ulm, G. Ulm. (2013). Near-field imaging and nano-Fourier-transform infrared spectroscopy using broadband synchrotron radiation. Optics Express, 21(3), 2913 (2013)-2919.

• Martin, M. C. Martin, C. Dabat-Blondeau,  MC., Unger, M., Sedlmair, J. Sedlmair, Parkinson,  DD. Y. Parkinson, Bechtel, H. A Bechtel, B. Illman, J.M. Castro,  M . Keiluweit, D. Buschke, B. & Ogle,  MB. J. Nasse, C.J. Hirschmugl. (2013). 3D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography. Nature Methods, 10(9), 861 (2013)-864.